public class QdFilter extends Object implements VariantFilter
| Modifier and Type | Field and Description |
|---|---|
static String |
FILTER_NAME |
| Constructor and Description |
|---|
QdFilter(double minimumQd) |
| Modifier and Type | Method and Description |
|---|---|
String |
filter(htsjdk.variant.variantcontext.VariantContext ctx)
Check to see if the VariantContext should have a filter applied to it.
|
List<htsjdk.variant.vcf.VCFFilterHeaderLine> |
headerLines()
Return VCF header lines that define filters that may be applied by the VariantFilter.
|
public static final String FILTER_NAME
public String filter(htsjdk.variant.variantcontext.VariantContext ctx)
VariantFilterfilter in interface VariantFilterpublic List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
VariantFilterheaderLines in interface VariantFilter