Field Summary

• Fields inherited from class picard.sam.SetNmMdAndUqTags

  INPUT, IS_BISULFITE_SEQUENCE, OUTPUT

• Fields inherited from class picard.cmdline.CommandLineProgram

  COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, TMP_DIR, VALIDATION_STRINGENCY, VERBOSITY

Constructor Summary

Method Summary

• Methods inherited from class picard.sam.SetNmMdAndUqTags

  customCommandLineValidation, doWork, main

• Methods inherited from class picard.cmdline.CommandLineProgram

  getCommandLine, getCommandLineParser, getDefaultHeaders, getMetricsFile, getNestedOptions, getNestedOptionsForHelp, getStandardUsagePreamble, getVersion, instanceMain, instanceMainWithExit, parseArgs, setDefaultHeaders

• Methods inherited from class java.lang.Object

  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait