Package picard.vcf

Class GenotypeConcordance.Alleles

  • Enclosing class:
    GenotypeConcordance
    protected static class GenotypeConcordance.Alleles
extends Object
    A simple structure to return the results of getAlleles. NB: truthAllele1/2 and callAllele1/2 may be null if no first or second allele was present respectively.

    • Field Detail

      • allAlleles

        public final picard.vcf.OrderedSet<String> allAlleles

      • truthAllele1

        public final String truthAllele1

      • truthAllele2

        public final String truthAllele2

      • callAllele1

        public final String callAllele1

      • callAllele2

        public final String callAllele2

    • Constructor Detail

      • Alleles

        public Alleles​(picard.vcf.OrderedSet<String> allAlleles,
               String truthAllele1,
               String truthAllele2,
               String callAllele1,
               String callAllele2)

    • Method Detail

      • asList

        public List<htsjdk.variant.variantcontext.Allele> asList()

      • truthAlleles

        public List<htsjdk.variant.variantcontext.Allele> truthAlleles()

      • callAlleles

        public List<htsjdk.variant.variantcontext.Allele> callAlleles()