Package picard.arrays.illumina

Class IlluminaBPMLocusEntry

  • public class IlluminaBPMLocusEntry
extends Object
    A simple class to represent a locus entry in an Illumina Bead Pool Manifest (BPM) file

    • Constructor Detail

      • IlluminaBPMLocusEntry

        public IlluminaBPMLocusEntry()

    • Method Detail

      • getVersion

        public int getVersion()

      • getIlmnId

        public String getIlmnId()

      • getName

        public String getName()

      • getIndex

        public int getIndex()

      • getSnp

        public String getSnp()

      • getChrom

        public String getChrom()

      • getPloidy

        public String getPloidy()

      • getSpecies

        public String getSpecies()

      • getMapInfo

        public int getMapInfo()

      • getCustomerStrand

        public String getCustomerStrand()

      • getAddressA

        public int getAddressA()

      • getAlleleAProbeSeq

        public String getAlleleAProbeSeq()

      • getAddressB

        public int getAddressB()

      • getAlleleBProbeSeq

        public String getAlleleBProbeSeq()

      • getGenomeBuild

        public String getGenomeBuild()

      • getSource

        public String getSource()

      • getSourceVersion

        public String getSourceVersion()

      • getSourceSeq

        public String getSourceSeq()

      • getTopGenomicSeq

        public String getTopGenomicSeq()

      • getExpClusters

        public int getExpClusters()

      • isIntensityOnly

        public boolean isIntensityOnly()

      • getAssayType

        public int getAssayType()

      • getFracA

        public float getFracA()

      • getFracC

        public float getFracC()

      • getFracT

        public float getFracT()

      • getFracG

        public float getFracG()

      • getRefStrand

        public htsjdk.tribble.annotation.Strand getRefStrand()

      • getNormalizationId

        public int getNormalizationId()