Build37ExtendedIlluminaManifestRecordCreator (picard 2.26.10 API)

java.lang.Object
- picard.arrays.illumina.Build37ExtendedIlluminaManifestRecordCreator

public class Build37ExtendedIlluminaManifestRecordCreator
extends Object

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`ACGT_CODES`
`static String`	`BUILD_37`
`static int`	`FIVE_PRIME_SEQUENCE`
`static int`	`INDEL_SEQUENCE`
`static String`	`IUPAC_NUCLEOTIDE_CODES`
`static int`	`PRE_INDEL_SEQUENCE`
`static int`	`THREE_PRIME_SEQUENCE`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Build37ExtendedIlluminaManifestRecord`	`createRecord(IlluminaManifestRecord illuminaManifestRecord)`
`Set<String>`	`getUnsupportedBuilds()`
`boolean`	`isRefStrandDefinedInManifest()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- BUILD_37
```
public static final String BUILD_37
```
  See Also:
  
  Constant Field Values
- IUPAC_NUCLEOTIDE_CODES
```
public static final String IUPAC_NUCLEOTIDE_CODES
```
  See Also:
  
  Constant Field Values
- ACGT_CODES
```
public static final String ACGT_CODES
```
  See Also:
  
  Constant Field Values
- FIVE_PRIME_SEQUENCE
```
public static final int FIVE_PRIME_SEQUENCE
```
  See Also:
  
  Constant Field Values
- PRE_INDEL_SEQUENCE
```
public static final int PRE_INDEL_SEQUENCE
```
  See Also:
  
  Constant Field Values
- INDEL_SEQUENCE
```
public static final int INDEL_SEQUENCE
```
  See Also:
  
  Constant Field Values
- THREE_PRIME_SEQUENCE
```
public static final int THREE_PRIME_SEQUENCE
```
  See Also:
  
  Constant Field Values

Method Detail

createRecord

public Build37ExtendedIlluminaManifestRecord createRecord(IlluminaManifestRecord illuminaManifestRecord)

getUnsupportedBuilds

public Set<String> getUnsupportedBuilds()

isRefStrandDefinedInManifest

public boolean isRefStrandDefinedInManifest()