java.lang.Object
- picard.analysis.GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector

All Implemented Interfaces:: PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.GcBiasCollectorArgs>

Enclosing class:: GcBiasMetricsCollector

public class GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector
extends Object
implements PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.GcBiasCollectorArgs>

Constructor Summary

Constructors
Constructor Description

PerUnitGcBiasMetricsCollector(String sample, String library, String readGroup)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`acceptRecord(picard.analysis.GcBiasCollectorArgs args)`	Add a SAMRecord (with ReferenceSequence and Read Group info) to the metric(s) being calculated)
`void`	`addMetricsToFile(htsjdk.samtools.metrics.MetricsFile<GcBiasMetrics,Integer> file)`	Any metrics collected will be added to the metric file provided.
`void`	`finish()`	When all records have been collected, compute any final values needed to finish constructing metrics/Histogram

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PerUnitGcBiasMetricsCollector
```
public PerUnitGcBiasMetricsCollector(String sample,
                                     String library,
                                     String readGroup)
```
- Method Detail
  - acceptRecord
```
public void acceptRecord(picard.analysis.GcBiasCollectorArgs args)
```
    Description copied from interface: PerUnitMetricCollector
    
    Add a SAMRecord (with ReferenceSequence and Read Group info) to the metric(s) being calculated)
    
    Specified by:
    
    acceptRecord in interface PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.GcBiasCollectorArgs>
    
    Parameters:
    
    args - Contains SAMRecord, SAMReadGroupRecord, ReferenceSequence of current record and any previously computed values that might be needed for this class
  - finish
```
public void finish()
```
    Description copied from interface: PerUnitMetricCollector
    
    When all records have been collected, compute any final values needed to finish constructing metrics/Histogram
    
    Specified by:
    
    finish in interface PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.GcBiasCollectorArgs>
  - addMetricsToFile
```
public void addMetricsToFile(htsjdk.samtools.metrics.MetricsFile<GcBiasMetrics,Integer> file)
```
    Description copied from interface: PerUnitMetricCollector
    
    Any metrics collected will be added to the metric file provided.
    
    Specified by:
    
    addMetricsToFile in interface PerUnitMetricCollector<GcBiasMetrics,Integer,picard.analysis.GcBiasCollectorArgs>
    
    Parameters:
    
    file - MetricsFile to which all metrics created by this collector should be added

Class GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

PerUnitGcBiasMetricsCollector

Method Detail

acceptRecord

finish

addMetricsToFile