SimpleErrorCalculator (picard 2.18.25 API)

java.lang.Object
- picard.sam.SamErrorMetric.BaseErrorCalculator
- - picard.sam.SamErrorMetric.SimpleErrorCalculator

All Implemented Interfaces:

BaseCalculator
```
public class SimpleErrorCalculator
extends BaseErrorCalculator
```
A calculator that estimates the error rate of the bases it observes, assuming that the reference is truth.

Field Summary

Fields
Modifier and Type Field Description

protected long nMismatchingBases

Constructor Summary

Constructors
Constructor Description

SimpleErrorCalculator()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)`	The function by which new loci are "shown" to the calculator
`BaseErrorMetric`	`getMetric()`	Returns the metric generated by the observed loci
`String`	`getSuffix()`	The suffix that pertains to the implementation of aggregation

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - nMismatchingBases
```
protected long nMismatchingBases
```
- Constructor Detail
  - SimpleErrorCalculator
```
public SimpleErrorCalculator()
```
- Method Detail
  - addBase
```
public void addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                    htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)
```
    The function by which new loci are "shown" to the calculator
    
    Specified by:
    
    addBase in interface BaseCalculator
    
    Overrides:
    
    addBase in class BaseErrorCalculator
  - getSuffix
```
public String getSuffix()
```
    The suffix that pertains to the implementation of aggregation
  - getMetric
```
public BaseErrorMetric getMetric()
```
    Returns the metric generated by the observed loci