Package picard.pedigree

Class PedFile.PedTrio

  • Enclosing class:
    PedFile
    public class PedFile.PedTrio
extends Object

    • Constructor Detail

      • PedTrio

        public PedTrio​(String familyId,
               String individualId,
               String paternalId,
               String maternalId,
               Sex sex,
               Number phenotype)
        Constructs a TRIO that cannot be modified after the fact.

    • Method Detail

      • hasBothParents

        public boolean hasBothParents()
        True if this record has paternal and maternal ids, otherwise false.

      • getFamilyId

        public String getFamilyId()

      • getIndividualId

        public String getIndividualId()

      • getPaternalId

        public String getPaternalId()

      • getMaternalId

        public String getMaternalId()

      • getSex

        public Sex getSex()

      • getPhenotype

        public Number getPhenotype()