Package picard.illumina.parser
Class NewIlluminaDataProvider
- java.lang.Object
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- picard.illumina.parser.BaseIlluminaDataProvider
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- picard.illumina.parser.NewIlluminaDataProvider
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- All Implemented Interfaces:
AutoCloseable,Iterable<ClusterData>,Iterator<ClusterData>
public class NewIlluminaDataProvider extends BaseIlluminaDataProvider
Parse cbcls Illumina Basecall files, and use them the to populate ClusterData objects.
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Field Summary
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Fields inherited from class picard.illumina.parser.BaseIlluminaDataProvider
lane
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description voidclose()static IntegerfileToTile(String fileName)booleanhasNext()ClusterDatanext()voidseekToTile(int seekAfterFirstRead)-
Methods inherited from class picard.illumina.parser.BaseIlluminaDataProvider
addData, addData, addData, addReadData, addReadData, addReadData, iterator
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface java.lang.Iterable
forEach, spliterator
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Methods inherited from interface java.util.Iterator
forEachRemaining, remove
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Method Detail
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close
public void close()
- Specified by:
closein interfaceAutoCloseable- Specified by:
closein classBaseIlluminaDataProvider
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seekToTile
public void seekToTile(int seekAfterFirstRead)
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hasNext
public boolean hasNext()
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next
public ClusterData next()
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