sbml Directory Reference

Directory dependency graph for sbml:

Directories
	annotation
	common
	conversion
	extension
	math
	packages
	util
	validator
	xml

Files
	AlgebraicRule.cpp
	Implementations of AlgebraicRule_t.
	AlgebraicRule.h
	Definitions of AlgebraicRule_t.
	AssignmentRule.cpp
	Implementations of AssignmentRule_t.
	AssignmentRule.h
	Definitions of AssignmentRule_t.
	Compartment.cpp
	Implementations of Compartment_t and ListOfCompartments_t.
	Compartment.h
	Definitions of Compartment_t and ListOfCompartments_t.
	CompartmentType.cpp
	Implementation of CompartmentType_t and ListOfCompartmentTypes_t.
	CompartmentType.h
	Definitions of CompartmentType_t and ListOfCompartmentTypes_t.
	Constraint.cpp
	Implementations of Constraint_t and ListOfConstraints_t.
	Constraint.h
	Definitions of Constraint_t and ListOfConstraints_t.
	Delay.cpp
	Implementation of Delay_t.
	Delay.h
	Definition of Delay_t.
	Event.cpp
	Implementations of Event_t and ListOfEvents_t.
	Event.h
	Definitions of Event_t and ListOfEvents_t.
	EventAssignment.cpp
	Implementation of EventAssignment_t.
	EventAssignment.h
	Definition of EventAssignment_t and ListOfEventAssignments_t.
	ExpectedAttributes.cpp
	Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect.
	ExpectedAttributes.h
	Definition of ExpectedAttributes, the class allowing the specification of attributes to expect.
	FunctionDefinition.cpp
	Implementation of FunctionDefinition_t and ListOfFunctionDefinitions_t.
	FunctionDefinition.h
	Definitions of FunctionDefinition_t and ListOfFunctionDefinitions_t.
	InitialAssignment.cpp
	Implementation of InitialAssignment_t and ListOfInitialAssignments_t.
	InitialAssignment.h
	Definitions of InitialAssignment_t and ListOfInitialAssignments_t.
	KineticLaw.cpp
	Implementation of KineticLaw_t.
	KineticLaw.h
	Definition of KineticLaw_t.
	ListOf.cpp
	Wraps List_t and inherits from SBase_t.
	ListOf.h
	LocalParameter.cpp
	Implementations of LocalLocalParameter and ListOfLocalLocalParameters.
	LocalParameter.h
	Definitions of LocalParameter_t and ListOfLocalParameters_t.
	Model.cpp
	Implementation of Model_t.
	Model.h
	Definition of Model_t.
	ModifierSpeciesReference.cpp
	Implementation of ModifierSpeciesReference_t.
	ModifierSpeciesReference.h
	Definitions of ModifierSpeciesReference_t.
	Parameter.cpp
	Implementations of Parameter_t and ListOfParameters_t.
	Parameter.h
	Definitions of Parameter_t and ListOfParameters_t.
	Priority.cpp
	Implementation of Priority_t.
	Priority.h
	Definition of Priority_t.
	RateRule.cpp
	Implementations of RateRule_t.
	RateRule.h
	Definitions of RateRule_t.
	Reaction.cpp
	Implementations of Reaction_t and ListOfReactions_t.
	Reaction.h
	Definitions of Reaction_t and ListOfReactions_t.
	Rule.cpp
	Implementations of Rule_t and ListOfRules_t.
	Rule.h
	Definitions of Rule_t and ListOfRules_t.
	SBase.cpp
	Implementation of SBase_t, the base object of all SBML objects.
	SBase.h
	Definition of SBase_t, the base object of all SBML objects.
	SBMLConstructorException.cpp
	Implementation of SBMLConstructorException_t, the exception class for constructor exceptions.
	SBMLConstructorException.h
	Definition of SBMLConstructorException_t, the exception class for constructor exceptions.
	SBMLConvert.cpp
	Performs conversion between SBML levels.
	SBMLDocument.cpp
	Implementation of the top-level container for an SBML Model_t and associated data.
	SBMLDocument.h
	Top-level container for an SBML Model_t and associated data.
	SBMLError.cpp
	Represents SBML errors and other diagnostics.
	SBMLError.h
	Represents SBML errors and other diagnostics.
	SBMLErrorLog.cpp
	Stores errors (and messages) encountered while processing SBML.
	SBMLErrorLog.h
	Stores errors (and messages) encountered while processing SBML.
	SBMLErrorTable.h
	Represents SBML errors and other diagnostics.
	SBMLNamespaces.cpp
	SBMLNamespaces_t class to store level/version and namespace.
	SBMLNamespaces.h
	SBMLNamespaces_t class to store level/version and namespace.
	SBMLReader.cpp
	Reads an SBML Document into memory.
	SBMLReader.h
	Reads an SBML Document into memory.
	SBMLTransforms.cpp
	Transform functions.
	SBMLTransforms.h
	SBMLTypeCodes.cpp
	Enumeration to identify SBML objects at runtime.
	SBMLTypeCodes.h
	Enumeration to identify SBML objects at runtime.
	SBMLTypes.h
	Include all SBML types in a single header file.
	SBMLVisitor.cpp
	Visitor Design Pattern for the SBML object tree.
	SBMLVisitor.h
	Visitor Design Pattern for the SBML object tree.
	SBMLWriter.cpp
	Writes an SBML Document to file or in-memory string.
	SBMLWriter.h
	Writes an SBML Document to file or in-memory string.
	SBO.cpp
	SBO_t utility functions.
	SBO.h
	SBO_t utility Function.
	SimpleSpeciesReference.cpp
	Implementation of SimpleSpeciesReference_t.
	SimpleSpeciesReference.h
	Definitions of SimpleSpeciesReference_t.
	Species.cpp
	Implementations of Species_t and ListOfSpecies_t.
	Species.h
	Definitions of Species_t and ListOfSpecies_t.
	SpeciesReference.cpp
	Implementation of SpeciesReference_t and ListOfSpeciesReferences_t.
	SpeciesReference.h
	Definitions of SpeciesReference_t and ListOfSpeciesReferences_t.
	SpeciesType.cpp
	Implementation of SpeciesType_t and ListOfSpeciesTypes_t.
	SpeciesType.h
	Definitions of SpeciesType_t and ListOfSpeciesType.
	StoichiometryMath.cpp
	Implementation of StoichiometryMath_t.
	StoichiometryMath.h
	Definition of StoichiometryMath_t.
	SyntaxChecker.cpp
	Syntax checking functions.
	SyntaxChecker.h
	Syntax checking functions.
	Trigger.cpp
	Implementation of Trigger_t.
	Trigger.h
	Definition of Trigger_t.
	Unit.cpp
	Implementations of Unit_t and ListOfUnits_t.
	Unit.h
	Definitions of Unit_t and ListOfUnits_t.
	UnitDefinition.cpp
	Implementations of SBML's UnitDefinition_t and ListOfUnitDefinitions_t.
	UnitDefinition.h
	Definitions of UnitDefinition_t and ListOfUnitDefinitions_t.
	UnitKind.c
	SBML UnitKind enumeration.
	UnitKind.h
	Definition of SBML's UnitKind enumeration.