SpinThread

java.lang.Object
- java.lang.Thread
- - org.jmol.thread.JmolThread
  - - org.jmol.thread.SpinThread

All Implemented Interfaces:: java.lang.Runnable

public class SpinThread
extends JmolThread

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private float`	`angle`
`private BS`	`bsAtoms`
`private BS[]`	`bsBranches`
`private float[]`	`dihedralList`
`private float`	`endDegrees`
`private javajs.util.Lst<javajs.util.P3>`	`endPositions`
`private boolean`	`haveNotified`
`private int`	`index`
`private boolean`	`isDone`
`private boolean`	`isGesture`
`private boolean`	`isNav`
`private javajs.util.M4`	`m4`
`private float`	`myFps`
`private float`	`nDegrees`
`private TransformManager`	`transformManager`

Fields inherited from class org.jmol.thread.JmolThread
CHECK1, CHECK2, CHECK3, currentTime, eval, FINISH, haveReference, hoverEnabled, INIT, isJS, isReset, junk, lastRepaintTime, MAIN, name, sc, sleepTime, startTime, stopped, targetTime, vwr

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor Description

SpinThread()

Constructors
Constructor	Description
`SpinThread()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`doTransform()`
`protected void`	`run1(int mode)`	Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and return
`int`	`setManager(java.lang.Object manager, Viewer vwr, java.lang.Object params)`

Methods inherited from class org.jmol.thread.JmolThread
checkInterrupted, interrupt, oops, reset, resumeEval, run, runSleep, setEval, setViewer, start

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, stop, stop, suspend, toString, yield

Field Detail

transformManager

private TransformManager transformManager

endDegrees
```
private float endDegrees
```

endPositions

private javajs.util.Lst<javajs.util.P3> endPositions

dihedralList
```
private float[] dihedralList
```

nDegrees
```
private float nDegrees
```

bsAtoms
```
private BS bsAtoms
```

isNav
```
private boolean isNav
```

isGesture
```
private boolean isGesture
```

myFps
```
private float myFps
```

angle
```
private float angle
```

haveNotified
```
private boolean haveNotified
```

index
```
private int index
```

bsBranches
```
private BS[] bsBranches
```

isDone
```
private boolean isDone
```

m4
```
private javajs.util.M4 m4
```

Constructor Detail
- SpinThread
```
public SpinThread()
```

Method Detail
- setManager
```
public int setManager(java.lang.Object manager,
                      Viewer vwr,
                      java.lang.Object params)
```
  Overrides:
  
  setManager in class JmolThread
  
  Returns:
  
  TODO
- run1
```
protected void run1(int mode)
             throws java.lang.InterruptedException
```
  Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and return
  
  Specified by:
  
  run1 in class JmolThread
  
  Throws:
  
  java.lang.InterruptedException
- doTransform
```
private void doTransform()
```

Class SpinThread

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class org.jmol.thread.JmolThread

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class org.jmol.thread.JmolThread

Methods inherited from class java.lang.Object

Methods inherited from class java.lang.Thread

Field Detail

transformManager

endDegrees

endPositions

dihedralList

nDegrees

bsAtoms

isNav

isGesture

myFps

angle

haveNotified

index

bsBranches

isDone

m4

Constructor Detail

SpinThread

Method Detail

setManager

run1

doTransform