VertexDataServerclass NffReader extends PolygonFileReader
| Modifier and Type | Field | Description |
|---|---|---|
protected int |
nPolygons |
|
private javajs.util.P3 |
pt |
|
private java.util.Map<java.lang.String,java.lang.Integer> |
vertexMap |
nTriangles, nVerticesallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor | Description |
|---|---|
NffReader() |
| Modifier and Type | Method | Description |
|---|---|---|
(package private) void |
getSurfaceData() |
|
private int |
getVertex() |
|
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
|
protected boolean |
readVerticesAndPolygons() |
|
protected void |
setHeader() |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitinit2PFR, readSurfaceData, readVolumeData, readVolumeParameterscloseReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprotected int nPolygons
private final java.util.Map<java.lang.String,java.lang.Integer> vertexMap
private final javajs.util.P3 pt
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2 in class SurfaceFileReaderprotected void setHeader()
void getSurfaceData()
throws java.lang.Exception
getSurfaceData in class PolygonFileReaderjava.lang.Exceptionprotected boolean readVerticesAndPolygons()
private int getVertex()
throws java.lang.Exception
java.lang.Exception