VertexDataServerclass IsoIntersectReader extends AtomDataReader
| Modifier and Type | Field | Description |
|---|---|---|
private BS[][] |
bsAtomMinMax |
|
private java.lang.Object[] |
func |
|
private int |
funcType |
|
private BS |
myBsA |
|
private BS |
myBsB |
|
private float[] |
thisPlaneB |
|
private static int |
TYPE_DIFF |
|
private static int |
TYPE_DIFF_PAIR |
|
private static int |
TYPE_FUNCTION |
|
private static int |
TYPE_MAX |
|
private static int |
TYPE_SUM |
|
private float[] |
values |
ac, atomData, atomIndex, atomNo, atomProp, atomRadius, atomXyzTruncated, bsMyIgnored, bsMySelected, bsNearby, bsSurfaceVoxels, contactPair, doAddHydrogens, doUseIterator, fileDotModel, fileName, firstNearbyAtom, haveOneProperty, havePlane, margin, maxDistance, maxRS, modelIndex, myAtomCount, myIndex, nearbyAtomCount, noFaceSpheres, pt0, pt1, ptV, ptY0, ptZ0, rs, rs2, sr, theProperty, thisAtomSet, thisPlane, thisX, validSpheres, vl0, vl1, vl2, voxelSourceallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanesallowMapData, dataType, maxGrid, point, precalculateVoxelData, ptsPerAngstrom, useOriginStepsPoints| Constructor | Description |
|---|---|
IsoIntersectReader() |
| Modifier and Type | Method | Description |
|---|---|---|
float[] |
getPlane(int x) |
|
private float |
getValueAB(float va,
float vb) |
|
float |
getValueAtPoint(javajs.util.T3 pt,
boolean getSource) |
|
private float |
getValueAtPoint2(javajs.util.T3 pt,
BS bs) |
|
(package private) void |
init(SurfaceGenerator sg) |
implemented in SurfaceFileReader and
|
protected boolean |
readVolumeParameters(boolean isMapData) |
|
protected void |
setup(boolean isMapData) |
|
private boolean |
setVoxels() |
getAtomMinMax, getAtoms, initADR, markPlaneVoxels, markSphereVoxels, resetPlane, resetVoxelData, setGridLimitsForAtom, setHeader, setRadii, setRanges, setup2, setVertexSource, setVolumeData, setVolumeDataADR, setVolumeForPlane, setVoxel, unsetVoxelData, unsetVoxelData2clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setOutputChannel, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglescloseReader, generateCube, initVDR, readSurfaceData, readSurfaceDataVDR, readVolumeData, readVoxelDataIndividually, setVolumeDataParams, setVoxelRange, showGridInfoprivate static final int TYPE_FUNCTION
private static final int TYPE_SUM
private static final int TYPE_DIFF
private static final int TYPE_MAX
private static final int TYPE_DIFF_PAIR
private final BS myBsA
private final BS myBsB
private BS[][] bsAtomMinMax
private java.lang.Object[] func
private int funcType
private float[] thisPlaneB
private final float[] values
void init(SurfaceGenerator sg)
SurfaceReaderinit in class VolumeDataReaderprotected boolean readVolumeParameters(boolean isMapData)
readVolumeParameters in class VolumeDataReaderprotected void setup(boolean isMapData)
setup in class AtomDataReaderpublic float[] getPlane(int x)
getPlane in interface VertexDataServergetPlane in class SurfaceReaderprivate boolean setVoxels()
private float getValueAB(float va,
float vb)
public float getValueAtPoint(javajs.util.T3 pt,
boolean getSource)
getValueAtPoint in class SurfaceReadergetSource - TODOprivate float getValueAtPoint2(javajs.util.T3 pt,
BS bs)