VertexDataServerclass CastepDensityReader extends PeriodicVolumeFileReader
| Modifier and Type | Field | Description |
|---|---|---|
private int |
nFilePoints |
|
private int |
nSkip |
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanesac, boundingBox, canDownsample, downsampleFactor, downsampleRemainders, endOfData, isAngstroms, nData, negativeAtomCount, nSkipX, nSkipY, nSkipZ, nSurfaces| Constructor | Description |
|---|---|
CastepDensityReader() |
| Modifier and Type | Method | Description |
|---|---|---|
protected void |
getPeriodicVoxels() |
|
protected void |
gotoData(int n,
int nPoints) |
|
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
|
protected void |
readParameters() |
|
private void |
skipPoints(int n) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitreadSurfaceDatacloseReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointIndexAndFraction, getValue2, getValueAtPoint, gotoAndReadVoxelData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglescheckAtomLine, closeReader, getNextVoxelValue, getPlane, getPlaneNCI, getSPFv, getSurfacePointAndFraction, getValue, getVoxelBitSet, init2VFR, initializeSurfaceData, nextVoxel, readSurfaceDataVFR, readVolumeData, readVolumeDataVFR, readVolumeParameters, readVoxelVector, recordData, skipComments, skipData, skipDataVFR, swapXZvoid init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2 in class VolumeFileReaderprotected void gotoData(int n,
int nPoints)
throws java.lang.Exception
gotoData in class VolumeFileReaderjava.lang.Exceptionprotected void readParameters()
throws java.lang.Exception
readParameters in class VolumeFileReaderjava.lang.Exceptionprotected void getPeriodicVoxels()
throws java.lang.Exception
getPeriodicVoxels in class PeriodicVolumeFileReaderjava.lang.Exceptionprivate void skipPoints(int n)