Metadata-Version: 2.1
Name: lefse
Version: 1.1.2
Summary:      LEfSe determines the features (organisms, clades, operational taxonomic units, genes, or functions)     most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding     biological consistency and effect relevance.
Home-page: http://github.com/SegataLab/lefse/
Author: Nicola Segata
Author-email: nicola.segata@unitn.it
License: UNKNOWN
Description: **LEfSe**
        ==============
        
        LEfSe (Linear discriminant analysis Effect Size) determines the features
        (organisms, clades, operational taxonomic units, genes, or functions)
        most likely to explain differences between classes by coupling standard
        tests for statistical significance with additional tests encoding
        biological consistency and effect relevance.
        
        LEfSe is available as a [Galaxy module](http://huttenhower.org/galaxy/),
        a Conda formula, a Docker image, and included in bioBakery (VM and
        cloud). For additional information, please refer to the [LEfSe
        paper](http://www.ncbi.nlm.nih.gov/pubmed/21702898).
        
        ## Installation
        
        LEfSe can be installed with Conda or run from a Docker image. Please
        note, if you are using bioBakery (Vagrant VM or cloud) you do not need
        to install LEfSe because the tool and its dependencies are already
        installed.
        
        Install with Conda: `$ conda install -c bioconda lefse`
        
        Install with Docker: `$ docker run -it biobakery/lefse bash`
        
        LEfSe requires R v. 3.6 or higher and the R libraries survival, mvtnorm, modeltools, coin, MASS. 
        
        We provide support for LEfSe users. Please join our [bioBakery Support Forum](https://forum.biobakery.org/c/Downstream-analysis-and-statistics/LEfSe) designated specifically for LEfSe users. 
        
Platform: UNKNOWN
Description-Content-Type: text/markdown
